In a margin account, the broker uses the $1,000 as a security deposit of sorts. If the investor's position worsens and his or her losses approach $1,000, the broker may initiate a margin call. When this occurs, the broker will usually instruct the investor to either deposit more money into the account or to close out the position to limit the risk to both parties.
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Risk Management - Many "research" backtests completely ignore risk management. Unfortunately this is generally necessary for brevity in describing the rules of a strategy. In reality we -must- use a risk overlay when trading, otherwise it is extremely likely that we will suffer a substantial loss at some stage. This is not to say that risk management can prevent this entirely, but it certainly makes it less likely!